Genomic Bayesian Prediction Model for Count Data with Genotype × Environment Interaction

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Genomic Bayesian Prediction Model for Count Data with Genotype × Environment Interaction.

Genomic tools allow the study of the whole genome, and facilitate the study of genotype-environment combinations and their relationship with phenotype. However, most genomic prediction models developed so far are appropriate for Gaussian phenotypes. For this reason, appropriate genomic prediction models are needed for count data, since the conventional regression models used on count data with ...

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Genomic Bayesian Prediction Model for Count Data with Genotype x Environment Interaction

Genomic tools allow the study of the whole genome, and facilitate the study of genotypeenvironment combinations and their relationship with phenotype. However, most genomic prediction models developed so far are appropriate for Gaussian phenotypes. For this reason, appropriate genomic prediction models are needed for count data, since the conventional regression models used on count data with a...

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Bayesian Genomic Prediction with Genotype × Environment Interaction Kernel Models

The phenomenon of genotype × environment (G × E) interaction in plant breeding decreases selection accuracy, thereby negatively affecting genetic gains. Several genomic prediction models incorporating G × E have been recently developed and used in genomic selection of plant breeding programs. Genomic prediction models for assessing multi-environment G × E interaction are extensions of a single-...

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A Bayesian Poisson-lognormal Model for Count Data for Multiple-Trait Multiple-Environment Genomic-Enabled Prediction

When a plant scientist wishes to make genomic-enabled predictions of multiple traits measured in multiple individuals in multiple environments, the most common strategy for performing the analysis is to use a single trait at a time taking into account genotype × environment interaction (G × E), because there is a lack of comprehensive models that simultaneously take into account the correlated ...

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Genomic Prediction of Genotype × Environment Interaction Kernel Regression Models.

In genomic selection (GS), genotype × environment interaction (G × E) can be modeled by a marker × environment interaction (M × E). The G × E may be modeled through a linear kernel or a nonlinear (Gaussian) kernel. In this study, we propose using two nonlinear Gaussian kernels: the reproducing kernel Hilbert space with kernel averaging (RKHS KA) and the Gaussian kernel with the bandwidth estima...

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ژورنال

عنوان ژورنال: G3 Genes|Genomes|Genetics

سال: 2016

ISSN: 2160-1836

DOI: 10.1534/g3.116.028118